PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_0B2C5ADF6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 287aa    MW: 31822.7 Da    PI: 4.9705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_0B2C5ADF6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-121462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd +l   +    g+ +W+++++  g+ R++k+c++rw +yl
  Traes_5DL_0B2C5ADF6.1 14 RGPWTAEEDRKLMAFILGNAGRcCWRAVPKLAGLLRCGKSCRLRWTNYL 62
                           89*************99998889**********99************97 PP

2Myb_DNA-binding54.33.2e-1771112447
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             T +E+ l vd++++lG++ W++Ia++++ gRt++++k++w+++
  Traes_5DL_0B2C5ADF6.1  71 LTDDEERLVVDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 112
                            699****************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-18563IPR009057Homeodomain-like
PROSITE profilePS5129410.81962IPR017930Myb domain
SuperFamilySSF466896.68E-2411109IPR009057Homeodomain-like
SMARTSM007171.5E-61364IPR001005SANT/Myb domain
PfamPF002491.8E-101462IPR001005SANT/Myb domain
CDDcd001674.57E-61662No hitNo description
PROSITE profilePS5129428.08763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-2564118IPR009057Homeodomain-like
SMARTSM007171.7E-1567115IPR001005SANT/Myb domain
PfamPF002498.0E-1571112IPR001005SANT/Myb domain
CDDcd001671.75E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTAE EDRKLMAFIL GNAGRCCWRA VPKLAGLLRC GKSCRLRWTN  60
YLRPDLKRGL LTDDEERLVV DLHAKLGNRW SKIAAKLPGR TDNEIKNHWN THIKKKLIKM  120
GIDPITHEPL EVRKQPQQAS LSTTSAQSST ITIECKSNNG EKSQQQDTHI NMDKDASSVG  180
SESSPPELSG TNTDNTTSGT NGMHDQDPLV KWLLEDEDDL PAIGIVEEPW LDFAVENDVD  240
KFNSIPSAMS WDIGATDWLL DYQDFGAGDS SLLEDASMVD SSSGSNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3660600.0AK366060.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2040B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578505.11e-128PREDICTED: protein ODORANT1-like
RefseqXP_015612200.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612201.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612203.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612204.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612205.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612206.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612207.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612208.11e-128PREDICTED: protein ODORANT1
RefseqXP_015612209.11e-128PREDICTED: protein ODORANT1
SwissprotQ50EX61e-89ODO1_PETHY; Protein ODORANT1
TrEMBLW5FQ660.0W5FQ66_WHEAT; Uncharacterized protein
STRINGMLOC_6696.11e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-81myb domain protein 20
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]